PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008731t2

Common Name

TCM_008731

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CAMTA

Protein Properties

Length: 988aa MW: 108897 Da PI: 5.4534

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008731t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.2	2.1e-55	14	128	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 e ++rwlk+ e+ iL+n+ek+elt+e++++p+ gsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ve+l+cyYah+ +np+fq Thecc1EG008731t2 14 EaQARWLKPAEVFFILQNHEKYELTQEPPQKPTGGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGAQNPNFQ 106 4499*************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+Le ++e+ivlvhy+e Thecc1EG008731t2 107 RRSYWMLEPAYEHIVLVHYREI 128 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.919	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.4E-75	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.7E-47	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.5E-8	419	508	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.3E-7	422	505	IPR002909	IPT domain
CDD	cd00102	3.00E-5	422	506	No hit	No description
SuperFamily	SSF81296	1.08E-17	422	505	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.90E-15	607	710	No hit	No description
Gene3D	G3DSA:1.25.40.20	6.1E-16	611	710	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.68	618	710	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.51E-16	620	712	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.4E-8	624	711	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.167	651	683	IPR002110	Ankyrin repeat
SMART	SM00248	0.0015	651	680	IPR002110	Ankyrin repeat
SMART	SM00248	1100	690	719	IPR002110	Ankyrin repeat
SMART	SM00015	26	768	790	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.455	769	798	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.34E-5	808	879	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	4.9	826	848	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.078	827	856	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.025	829	847	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.22	850	872	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.687	851	875	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.065	859	872	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MAQSEYDINN LFREAQARWL KPAEVFFILQ NHEKYELTQE PPQKPTGGSL FLFNKRVLRF 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNVE TLNCYYAHGA QNPNFQRRSY WMLEPAYEHI 120 VLVHYREINE AKPSSASIVQ SPVSSSGFSL SPNSYTSQNP GSNSLASDVH EPYQNSSSPG 180 SVEVSSDIVI KNNGIDNAVE FASSADLQVS EALKRLEEQL SLNEDSFKEM SPLCCLDGDT 240 NDSRFLEYGR EITKQELQAG LLYEPNDIVQ DHLYSQHPRV ENYSNSFGLL PDGGKNGQNS 300 QVYVSDSSDG SKESLYWKNV FDSCKTQSGV DSQGKPLTSS RTGPASQQEE SRWLNINGSN 360 IGDSSVLLHQ EVENDIIPSY SSAIEGVDTN SDYYAMLFNQ DGIGVPLAAD SSLTVAQKQK 420 FTIAEVSPEW GYSSEATKVI IVGSFLCDPL ESAWACMFGE TEVPLEIIQE GVICCKAPPH 480 LPGKVTLCIT SGNRESCSEV REFEYIANTN SCAQCNLSHK EANRSPEELL LLVRFVQLLL 540 SDSLQKDSIE SGIYLRSKFK ADDDSWSHVI EALLVGSGTS SGTVDWLLEE LLKDKLQQWL 600 CSRSKGAVDQ SGCTMSKKEQ GIIHMAAGLG FEWALTPILN HGVGINFRDI NGWTALHWAA 660 RIGREKMVAA LIASGASAGA VTDPTSQDPS GKTAAFIAAS SGNKGLAGYL SELALTSHLS 720 SLTLEESELS KGSAAVQAEM AVNSVSKGSL ATGEDQLSLK DTLAAVRNAA QAAARIQNAF 780 RAHSFRKRQQ KEAVATAASV DEYGISSDEI QGLSTLSKLA FGNARDYNSA ALSIQKKFRG 840 WKGRKDFLAL RQKVVKIQQA HVRGYQVRKN YKVICWAVGV LDKVVLRWRR KGVGLRGFRS 900 EPESIDESED EDILKVFRKQ KVDVAVDEAV SRVLSMVDSP DARQQYRRML ERYRQAKADL 960 VNTNEPAAST SIGDTYDMES DESFQFP*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MAQSEYDINN LFREAQARWL KPAEVFFILQ NHEKYELTQE PPQKPTGGSL FLFNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNVE TLNCYYAHGA QNPNFQRRSY WMLEPAYEHI  120
VLVHYREINE AKPSSASIVQ SPVSSSGFSL SPNSYTSQNP GSNSLASDVH EPYQNSSSPG  180
SVEVSSDIVI KNNGIDNAVE FASSADLQVS EALKRLEEQL SLNEDSFKEM SPLCCLDGDT  240
NDSRFLEYGR EITKQELQAG LLYEPNDIVQ DHLYSQHPRV ENYSNSFGLL PDGGKNGQNS  300
QVYVSDSSDG SKESLYWKNV FDSCKTQSGV DSQGKPLTSS RTGPASQQEE SRWLNINGSN  360
IGDSSVLLHQ EVENDIIPSY SSAIEGVDTN SDYYAMLFNQ DGIGVPLAAD SSLTVAQKQK  420
FTIAEVSPEW GYSSEATKVI IVGSFLCDPL ESAWACMFGE TEVPLEIIQE GVICCKAPPH  480
LPGKVTLCIT SGNRESCSEV REFEYIANTN SCAQCNLSHK EANRSPEELL LLVRFVQLLL  540
SDSLQKDSIE SGIYLRSKFK ADDDSWSHVI EALLVGSGTS SGTVDWLLEE LLKDKLQQWL  600
CSRSKGAVDQ SGCTMSKKEQ GIIHMAAGLG FEWALTPILN HGVGINFRDI NGWTALHWAA  660
RIGREKMVAA LIASGASAGA VTDPTSQDPS GKTAAFIAAS SGNKGLAGYL SELALTSHLS  720
SLTLEESELS KGSAAVQAEM AVNSVSKGSL ATGEDQLSLK DTLAAVRNAA QAAARIQNAF  780
RAHSFRKRQQ KEAVATAASV DEYGISSDEI QGLSTLSKLA FGNARDYNSA ALSIQKKFRG  840
WKGRKDFLAL RQKVVKIQQA HVRGYQVRKN YKVICWAVGV LDKVVLRWRR KGVGLRGFRS  900
EPESIDESED EDILKVFRKQ KVDVAVDEAV SRVLSMVDSP DARQQYRRML ERYRQAKADL  960
VNTNEPAAST SIGDTYDMES DESFQFP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970953.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A061E452	0.0	A0A061E452_THECC; Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains isoform 2
STRING	EOX99793	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Thecc1EG008731t2
Entrez Gene	18608969

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]