PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG008853t1

Common Name

TCM_008853

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YC

Protein Properties

Length: 234aa MW: 26374.7 Da PI: 11.4174

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG008853t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	44.9	2.5e-14	97	181	15	98
NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 d + e+P r+k+i+k d+d+++i +ea l+s + +lf+ l+ rs a e+k++t+k + +av+r + dfl+d p Thecc1EG008853t1 97 DPIRPEFPTGRVKRIMKLDKDINKINSEALFLVSCSTDLFLRFLAERSAEVATEKKKKTVKLDHLRTAVKRHRpTSDFLLDSLPM 181 555679*************************************************************9975389***9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	9.72E-17	67	168	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.1E-19	101	166	IPR009072	Histone-fold
Pfam	PF00808	3.0E-18	102	165	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MRKSPMALMK KRALKSLVEV SAKITLPLEL PSLNEADKNW TRKLRRSNRK VKTSGSLAAM 60 RAAAKRRRQN GAGQNATRGW GKNKMFQRIP KKDEAIDPIR PEFPTGRVKR IMKLDKDINK 120 INSEALFLVS CSTDLFLRFL AERSAEVATE KKKKTVKLDH LRTAVKRHRP TSDFLLDSLP 180 MPAESTQSAA RTVTEREPSR PVADKPAAAG TRRIDHFFQH ITITCDYIQN GIS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972017.1	7e-85	PREDICTED: nuclear transcription factor Y subunit gamma
TrEMBL	A0A061E4H1	1e-170	A0A061E4H1_THECC; Chromatin accessibility complex protein 1
STRING	EOX99870	1e-171	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12860	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	7e-43	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	Thecc1EG008853t1
Entrez Gene	18609018

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]