PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG010176t1
Common NameTCM_010176
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 251aa    MW: 27815.7 Da    PI: 6.9933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG010176t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002781103123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C k F ++  L  H++ H
  Thecc1EG010176t1  81 FECQYCFKEFANSQALGGHQNAH 103
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-676108No hitNo description
Gene3DG3DSA:3.30.160.601.3E-576107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40681108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEMDASSLIS QTCDGENGYS PAASCVEKKL RLFGFELNPS KNNDNSLKSS AEGDESVNSS  60
STRETPTKEK SSTGETDDKK FECQYCFKEF ANSQALGGHQ NAHKKERMKK KRLQLQAKRA  120
SINCYLQPFQ NSLGFSYQGS TPWYYDSSCY SAPEITLYEE SQISFNQYEH DAHLNGSQPS  180
KWYALPSQMI PFQQDSSMFT LTHADRSREN RPVGLKPSAL PSSKQSCKSL DLQLGLSLQS  240
TIQSSSGSGI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044496.10.0PREDICTED: zinc finger protein 5
TrEMBLA0A061E6R50.0A0A061E6R5_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY003280.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.11e-21zinc finger protein 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]