PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG010319t1

Common Name

TCM_010319

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 174aa MW: 19276.1 Da PI: 8.4821

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG010319t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.2e-11	16	62	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +E+ RR r+++ +++L +llP++ +K+s ++Le+A+ YI++L+ Thecc1EG010319t1 16 RTLVEKERRMRLRNLYSQLSSLLPPQ----PRKMSTHDVLEQATLYINQLR 62 6789*******************6....39***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-14	8	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	10	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.938	11	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.55E-8	13	66	No hit	No description
Pfam	PF00010	3.7E-8	16	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-7	17	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MDTGAASGSS SSKINRTLVE KERRMRLRNL YSQLSSLLPP QPRKMSTHDV LEQATLYINQ 60 LRKRVEELKQ MKLQLQECEG ATETTSGPTI SPVINISDLD STLEVNLITG WDGKFKLSDI 120 IKVLMEEGAE VKTVAANHNA GDRTIYSICC RAINSRIGIA TSRVQERLQD LIS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021293568.1	1e-111	transcription factor bHLH168-like
TrEMBL	A0A061E647	1e-123	A0A061E647_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY00456	1e-124	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	3e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG010319t1
Entrez Gene	18609445

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]