PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG010411t1
Common NameTCM_010411
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family YABBY
Protein Properties Length: 246aa    MW: 27321.1 Da    PI: 7.502
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG010411t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY209.98.9e-6561752166
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekee 90 
                       ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhC+sllsvn++kas    qlla+   l+++  +e +e    ee +      +++
  Thecc1EG010411t1   6 HLFDLPEQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCSSLLSVNMMKASfvplQLLAS---LGHDHDDEPKEGAVCEEVAA----PRKT 91 
                       7899*********************************************9998433333333...33333333333333333222....2222 PP

             YABBY  91 sastsvssekl...senedeevprvpp.virPPekrqrvPsaynrfik......eeiqrikasnPdishreafsaaaknWahfPki 166
                       +a++  +s  l   s+ne+e++ rv p v++PPekrqr+Psaynrfik      eei+r+ka+nP+i h+eafs+aaknWahfP++
  Thecc1EG010411t1  92 AAHRRSPS--LmtsSDNEEEDIVRVNPtVNKPPEKRQRAPSAYNRFIKlipggrEEIRRLKAQNPNIPHKEAFSTAAKNWAHFPPM 175
                       22222222..22348999999***9888*******************8888888******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.3E-6011176IPR006780YABBY protein
SuperFamilySSF470953.35E-5117174IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSTLNHLFDL PEQICYVQCG FCTTILLVSV PCSSLSMVVT VRCGHCSSLL SVNMMKASFV  60
PLQLLASLGH DHDDEPKEGA VCEEVAAPRK TAAHRRSPSL MTSSDNEEED IVRVNPTVNK  120
PPEKRQRAPS AYNRFIKLIP GGREEIRRLK AQNPNIPHKE AFSTAAKNWA HFPPMDTKGD  180
GESCGLDEGQ ALWNSDATQV LHVSRFDGKN KFTYKAMLSV KEKPQGVPYG PRHRLREDAL  240
DIDFY*
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970074.11e-140PREDICTED: axial regulator YABBY 4 isoform X1
RefseqXP_017970075.11e-140PREDICTED: axial regulator YABBY 4 isoform X2
SwissprotQ9LDT36e-70YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A061E6860.0A0A061E686_THECC; Plant-specific transcription factor YABBY family protein
STRINGEOY005300.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80442740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.13e-72YABBY family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  3. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  4. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]