PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG010540t1
Common NameTCM_010540
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 492aa    MW: 53436.8 Da    PI: 7.7737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG010540t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17131180255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Thecc1EG010540t1 131 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 180
                       59*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.4E-32131196IPR001471AP2/ERF domain
CDDcd000183.27E-29131187No hitNo description
PROSITE profilePS5103222.049131188IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-21131188IPR016177DNA-binding domain
PfamPF008478.4E-11131180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-29131187IPR001471AP2/ERF domain
PRINTSPR003673.3E-9132143IPR001471AP2/ERF domain
PRINTSPR003673.3E-9154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MLQRSSTFQV PSPLSPEPRN RPRKEPLSFF FIFLPVIPSY TFSVVLCVVS SAAGKIYPME  60
EAFRRLNGIT HVPDPDPRDC ITGNPKKCAA ATTTASTVTP TTTTTTTTTT TTLTTNKRSL  120
KENGGPGGTM RYRGVRRRPW GRYAAEIRDP QSKERRWLGT FDTAEEAACA YDCAARAMRG  180
IKARTNFVYP ATEPHSANDH FLPPFNFTKQ SQPPIRDLNT TRHQFGHSSN WSSFANPHVG  240
DFSGGSTPQR NASLNLLLLR DLLNSSSNSS LHAPPHSFVD QFPFINGTSS ASSSSTTIST  300
PSSLPGGALL NSSTNATLRA NDNMAGSFIG STMTLPLKGN NSSHTTGVPA MSTCQAECME  360
FFPQEPSDSG LLQEIIQGFL PKPMSRKSDD LARISNCAQD STVPPVSEMS FSQSLSGLKE  420
SKNEHLGFYI DYQGVPHQQF ESFNGITGSQ VVPYGNEVAV NHLQLGEDCM LDDIFQYPDL  480
LGALAARVQN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201311981476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044810.20.0PREDICTED: ethylene-responsive transcription factor ESR1
TrEMBLA0A061E8G40.0A0A061E8G4_THECC; DORNROSCHEN-like, putative
STRINGEOY006420.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-13DORNROSCHEN-like
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]