PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG010708t1

Common Name

TCM_010708

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 500aa MW: 56277.8 Da PI: 6.8223

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG010708t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	364	2.2e-111	129	499	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilk 92 lv++L++cAeav+ + + a+alL++l+ +a g+++qR+a++f+++La rla +++ + + + ++++ + e+ al+l +e++P +k Thecc1EG010708t1 129 LVQQLIACAEAVAYRVKIYASALLSELRANALVFGTSFQRVASCFVQGLADRLALVQPQRAVGVvGAVAKAKAVTFEKDEALSLVYELCPQIK 221 689*************************************************966665555525555555557788889999***** PP GRAS 93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 f+h++aN Ilea+ege+ vH++D++++ G QW L+q+L R+++pp +lRiT+vg e+l+++g+ L+++A++l+++fef+v Thecc1EG010708t1 222 FGHFVANASILEAFEGESFVHVVDLGMTlgllRGHQWCHLMQSLVHRAGQPPkRLRITAVGT----CCERLQAIGDDLEHYAKSLKLNFEFSV 310 ********************99872222567*********777779****....9*********************9 PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 v+ +le+l++e+++++ +Eal++n++lqlh +++es + +vL+ +++lsPk++++veq+++hn++ Fl rf+eal+yysa+fdsl+a Thecc1EG010708t1 311 -VECNLENLKPEDFNTSGDEALVINSILQLHCVVKESRGALN---SVLQKLRELSPKLLILVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDA 399 .6889*************************88877777...8******************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365 lp+ + r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+p++ + +qak l+k+k +g ++ e++g+lvlgWk++ Thecc1EG010708t1 400 MLPKYDTRRAKMEQFYFAEEIKNIVSCEGPDRIERHERVDQWRRRMSRAGFQPAPVK--MIMQAKQWLEKIKvCEGNTIVEDKGCLVLGWKSK 490 ***************************************************96..689*************************** PP GRAS 366 pLvsvSaWr 374 p++++S+W+ Thecc1EG010708t1 491 PIIAASCWK 499 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.716	103	480	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.5E-109	129	499	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MEPVLQWRPR LYGDDKSSEV MALDLNLPGI QIYPFSCPIY QNWPIFYETR NHKRLKQDHL 60 MDVSIGSNGN SDGSTNSLTS LPRLQFRDHV WAYAQRYLTI AAMEEAAVAM TGGEENEIKE 120 EEGGEGMRLV QQLIACAEAV AYRVKIYASA LLSELRANAL VFGTSFQRVA SCFVQGLADR 180 LALVQPQRAV GVVGAVAKAK AVTFEKDEAL SLVYELCPQI KFGHFVANAS ILEAFEGESF 240 VHVVDLGMTL GLLRGHQWCH LMQSLVHRAG QPPKRLRITA VGTCCERLQA IGDDLEHYAK 300 SLKLNFEFSV VECNLENLKP EDFNTSGDEA LVINSILQLH CVVKESRGAL NSVLQKLREL 360 SPKLLILVEQ DSSHNGPFFL GRFMEALHYY SAIFDSLDAM LPKYDTRRAK MEQFYFAEEI 420 KNIVSCEGPD RIERHERVDQ WRRRMSRAGF QPAPVKMIMQ AKQWLEKIKV CEGNTIVEDK 480 GCLVLGWKSK PIIAASCWK*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MEPVLQWRPR LYGDDKSSEV MALDLNLPGI QIYPFSCPIY QNWPIFYETR NHKRLKQDHL  60
MDVSIGSNGN SDGSTNSLTS LPRLQFRDHV WAYAQRYLTI AAMEEAAVAM TGGEENEIKE  120
EEGGEGMRLV QQLIACAEAV AYRVKIYASA LLSELRANAL VFGTSFQRVA SCFVQGLADR  180
LALVQPQRAV GVVGAVAKAK AVTFEKDEAL SLVYELCPQI KFGHFVANAS ILEAFEGESF  240
VHVVDLGMTL GLLRGHQWCH LMQSLVHRAG QPPKRLRITA VGTCCERLQA IGDDLEHYAK  300
SLKLNFEFSV VECNLENLKP EDFNTSGDEA LVINSILQLH CVVKESRGAL NSVLQKLREL  360
SPKLLILVEQ DSSHNGPFFL GRFMEALHYY SAIFDSLDAM LPKYDTRRAK MEQFYFAEEI  420
KNIVSCEGPD RIERHERVDQ WRRRMSRAGF QPAPVKMIMQ AKQWLEKIKV CEGNTIVEDK  480
GCLVLGWKSK PIIAASCWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-59	113	498	1	377	Protein SCARECROW
5b3h_D	2e-59	113	498	1	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970471.1	0.0	PREDICTED: DELLA protein RGL1
TrEMBL	A0A061E8V5	0.0	A0A061E8V5_THECC; GRAS family transcription factor
STRING	EOY00792	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16018	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	7e-77	RGA-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG010708t1
Entrez Gene	18609665

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]