PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011136t1

Common Name

TCM_011136

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 339aa MW: 38679.1 Da PI: 7.5287

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011136t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.6	4.3e-20	41	131	2	86
trihelix 2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt qe+l+Li+a+r ++er + +k + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ +++ +s+ss ++p + ++e Thecc1EG011136t1 41 WTIQETLTLITAKRLDDERRTKpstsspSKPGELRWKWVENYCWDHGCFRSQNQCNDKWDNLLRDYKKVRHYQSQSQSQSSDHFPSYWSME 131 ************77666664333323468899*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-4	32	105	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.248	33	103	IPR017877	Myb-like domain
Pfam	PF13837	3.7E-14	40	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSNPPPPLPP TLHPQPPHIT AATTVTPSPT PTNREYRKGN WTIQETLTLI TAKRLDDERR 60 TKPSTSSPSK PGELRWKWVE NYCWDHGCFR SQNQCNDKWD NLLRDYKKVR HYQSQSQSQS 120 SDHFPSYWSM ERHQRKLHNL PTNMSPEVFE ALNDLLQRKY STQQQQQSTG SIQQQQQKQP 180 CISQLSEQVA AGTDQQAPEV EAPVTGSEES DSSETESSEN LGSETKRKKV RKIGSSIMQS 240 ASVLAQTLKS CEEKKEKRHQ EVMELEQRRL QIEETRNEVN RKGITDLVAA MTNLSGAIQS 300 LIANHYDQTP ALLFRQWTWI CDDVPLPKIE SCDRGIAV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970284.1	0.0	PREDICTED: trihelix transcription factor ASR3
TrEMBL	A0A061EA14	0.0	A0A061EA14_THECC; Transcription factor, putative
STRING	EOY01187	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-41	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG011136t1
Entrez Gene	18609931

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]