PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011217t1

Common Name

TCM_011217

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ZF-HD

Protein Properties

Length: 184aa MW: 21064.1 Da PI: 10.8636

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011217t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	74.5	1.6e-23	3	52	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k +Y++C++NhA lGg+a+DGC Ef+ps+++ +C ACgCHRn+HR+ + Thecc1EG011217t1 3 KETYRDCQRNHACYLGGYAIDGCSEFIPSNNK-----ESHCKACGCHRNYHRKVP 52 679***********************9544.....579**********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.0E-19	5	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.8E-18	5	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-10	6	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.9	6	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.0E-14	98	163	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.53E-6	100	162	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.2E-22	106	163	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEKETYRDCQ RNHACYLGGY AIDGCSEFIP SNNKESHCKA CGCHRNYHRK VPFIYSKEYP 60 EIGHRSGKSF WSLREAKRIA RQHRVLPAPS PQVLVLKQQN SNRKFKQRKS KFTGGQREAM 120 RALAESLGWT MRNKGRQTEI NRFCGRIGVS RLHFKTWLNN NKKLYFKGTA SMSGANSSSS 180 KAV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	108	NRKFKQRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00143	DAP	Transfer from AT1G14687	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007045440.2	1e-133	PREDICTED: zinc-finger homeodomain protein 14
TrEMBL	A0A061EA71	1e-135	A0A061EA71_THECC; Homeobox protein 32, putative
STRING	EOY01272	1e-135	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13728	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14687.1	1e-38	homeobox protein 32

Link Out ? help Back to Top
Phytozome	Thecc1EG011217t1
Entrez Gene	18609986

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]