PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011478t1
Common NameTCM_011478
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27448 Da    PI: 7.1145
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011478t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92.1e-31959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s
  Thecc1EG011478t1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59
                      79***********************************************96 PP
2K-box96.93.1e-32821739100
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       ++e++++s++qe+ kLk+++e Lqr+qRh+lGedL++L   eL+qLe+qL+ slk+ Rs+K++ +l+q+ elq+ke+ l e+n++Lr+klee
  Thecc1EG011478t1  82 QTESDTQSSYQEYLKLKAKVEVLQRSQRHFLGEDLGDLGSTELEQLEHQLDFSLKQLRSTKMHSMLDQLAELQRKEEILLETNRNLRRKLEE 173
                       68999************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.347161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-33282IPR002100Transcription factor, MADS-box
CDDcd002658.77E-44278No hitNo description
PRINTSPR004041.2E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014866.6E-2684171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.02187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCST  60
SSMAKTLERY HRCTYGTLEP GQTESDTQSS YQEYLKLKAK VEVLQRSQRH FLGEDLGDLG  120
STELEQLEHQ LDFSLKQLRS TKMHSMLDQL AELQRKEEIL LETNRNLRRK LEESTSTLRS  180
SWETGEQSNP YNHHPPPQPE GFFEPLQCSS SMQIGYNPTA ADQDAAAASA PNGFIPGWML  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-238917119101Developmental protein SEPALLATA 3
4ox0_B1e-238917119101Developmental protein SEPALLATA 3
4ox0_C1e-238917119101Developmental protein SEPALLATA 3
4ox0_D1e-238917119101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00030SELEXTransfer from AT2G03710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2718850.0JF271885.1 Gossypium hirsutum SEPALLATA2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970029.11e-180PREDICTED: MADS-box protein CMB1 isoform X2
SwissprotQ8LLR21e-112MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A061E9L11e-179A0A061E9L1_THECC; MADS-box transcription factor
STRINGEOY016311e-179(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.21e-102MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]