PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011632t1
Common NameTCM_011632
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 397aa    MW: 43805.8 Da    PI: 4.4629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011632t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-1952101255
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++ GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+g
  Thecc1EG011632t1  52 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAAYLLRG 101
                       789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.00E-3151108No hitNo description
SuperFamilySSF541712.81E-1952109IPR016177DNA-binding domain
SMARTSM003801.4E-3352115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-2752108IPR001471AP2/ERF domain
PfamPF008476.2E-1452101IPR001471AP2/ERF domain
PROSITE profilePS5103219.99452109IPR001471AP2/ERF domain
PRINTSPR003671.2E-75364IPR001471AP2/ERF domain
PRINTSPR003671.2E-77591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MNLRQESMMG KRKLASEGKG NSVDEEVTWE QMVMDSAAAV AAFNGARRAR KRFVGVRQRP  60
SGRWVAEIKD TIQKIRVWLG TYDTAEEAAR AYDEAAYLLR GANTRTNFWP FSPSSKPVLP  120
SKIVNLLLLR LKDSSASAAA SMASNSPVNV LGYEAAAGED MCIDDFFNVP EDCSQNTISS  180
SSTSTTTTSS SATATDCMLE MMTFGLNFAN TENGDHDLKA IHLGNSHIEG GREEKREGSK  240
EEEEIDMEGL LDFQFVDAVG LSCCCSPFEI AEEMVEEPME QQENDGDDPS MLRETMKRMK  300
YERKFSASLY AFHGIPECLR MKHNESAGND KPEHQSNLRN NFDTDKKPEI KEEHEQVGII  360
PETSIETGSP SAYSSLSNEA AEIWSSLDLP PIGLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13521081471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045992.20.0PREDICTED: uncharacterized protein LOC18610334
TrEMBLA0A061EHQ50.0A0A061EHQ5_THECC; WIN1-like protein
STRINGEOY018240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1961567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-15related to AP2 11
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]