PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011797t1
Common NameTCM_011797
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 390aa    MW: 43988.2 Da    PI: 8.5377
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011797t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.8e-1168124155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a+ k++g
  Thecc1EG011797t1  68 SRFRGVSRHRWTGRFEAHLWDkASWNPtQRkKGKQ-GAYDEEESAARAYDLAAIKYWG 124
                       789******************77777786625555.********************98 PP
2AP253.65.5e-17167218155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  Thecc1EG011797t1 167 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 218
                       79****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-868124IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1468134IPR016177DNA-binding domain
CDDcd000183.60E-1768134No hitNo description
PROSITE profilePS5103217.93869132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1169133IPR001471AP2/ERF domain
SMARTSM003801.6E-1869138IPR001471AP2/ERF domain
PRINTSPR003672.8E-57081IPR001471AP2/ERF domain
PfamPF008471.1E-12167218IPR001471AP2/ERF domain
CDDcd000184.08E-23167228No hitNo description
SuperFamilySSF541712.88E-17167228IPR016177DNA-binding domain
PROSITE profilePS5103218.492168226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17168227IPR001471AP2/ERF domain
SMARTSM003803.6E-24168232IPR001471AP2/ERF domain
PRINTSPR003672.8E-5208228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEMITAKSEM GPGRRRLCMA EGDNIETKCI KRRRRDPSTG SLGCYNQQGE QQQQQGDQPT  60
ATTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNPTQRKKG KQGAYDEEES AARAYDLAAI  120
KYWGTSTFTN FPVSDYEKEI EIMKAVTKEE YLASLRRRSS GFSRGVSRYR GVARHHHNGR  180
WEARIGRVFG NKYLYLGTYG TQEEAAHAYD IAAIEYRGIN AVTNFDLSTY IRWLKPGANQ  240
TTLVSQPMTA SNPFPTEQTP DVPLFNSNPF TVEALDSPRK QDVLQKKAPV SPCPKSSSPT  300
ALSLLLRSSM FNKLVEENLN ANFDVTEEND TKELLEIVDN NGVGDMFYNE IDHVPDALPG  360
LESEDGKLPL YNKTGQFTWN GALNLPLLH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRLCMAEGDNIETKCIKRRRR
293101PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970512.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A061EIB60.0A0A061EIB6_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY020490.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-73AP2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]