PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011973t1
Common NameTCM_011973
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family E2F/DP
Protein Properties Length: 181aa    MW: 20721.7 Da    PI: 6.5076
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011973t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP54.12.5e-172173158
           E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnl 58
                      rk+ksL+ll+++fl+l+++++ + + l+e+a +L    v  +r RiYDi+NVLe+++l
  Thecc1EG011973t1 21 RKQKSLGLLCSNFLSLYNREDVELIGLDEAAAKL---GV--ERHRIYDIVNVLESVGL 73
                      79*****************999************...**..**************987 PP
2zf-C2H212.60.000499122123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       + C++C k+ ++ s ++ Hi+  H
  Thecc1EG011973t1  99 FFCNICEKMIKDLSGFTAHIKDrH 122
                       67******************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-191773IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.88E-112074IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-1421115IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-142273IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:3.10.370.107.4E-492150No hitNo description
PROSITE patternPS000280101122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MPVSSSPSLP ESSSRHYTYS RKQKSLGLLC SNFLSLYNRE DVELIGLDEA AAKLGVERHR  60
IYDIVNVLES VGLAWLLETQ DHFLSNLMGR KKNKPEQIFF CNICEKMIKD LSGFTAHIKD  120
RHKKSRSCRK CNMIFTSDVD LLIHSDAKEC YDYLKRIELL SQDEIKTEDL ESSLEEVGEK  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021292037.18e-33E2F transcription factor-like E2FE isoform X1
RefseqXP_021292038.16e-33E2F transcription factor-like E2FE isoform X2
TrEMBLA0A061FTB91e-129A0A061FTB9_THECC; DP-E2F-like 1
STRINGEOY205951e-130(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.12e-28DP-E2F-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]