PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG012044t1

Common Name

TCM_012044

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 211aa MW: 23686.6 Da PI: 9.2979

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG012044t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.5	4.3e-07	15	92	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...............................TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as............................kapskKlsKaeiLekAveYIksL 54 + +Er+RR +++ ++L +l+P+ ++ + +s + L + v YIk+L Thecc1EG012044t1 15 KTIERNRRIHMKALCFKLASLVPQqRFkpskvyiciyiellilslpsfflsqeylTDFWEIVSQTDQLDLGVAYIKHL 92 679*******************666999********99999999999999888889999999999999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-7	14	37	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-7	15	39	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-7	69	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-7	71	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MKKSGGGEAS KPDRKTIERN RRIHMKALCF KLASLVPQQR FKPSKVYICI YIELLILSLP 60 SFFLSQEYLT DFWEIVSQTD QLDLGVAYIK HLRERIEKLK VIKEQMMKSV EASSNIMNNN 120 ASGGLGLPVV EIRDLGSSIE VILISGLNKN FMLYEVIGIL EQEGAEVVSA SFSTVGGKIF 180 HNLHAQVKIS RVGVDTSTVF QRLQELISYY *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972432.1	1e-123	PREDICTED: uncharacterized protein LOC18603887
TrEMBL	A0A061FV24	1e-152	A0A061FV24_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY20687	1e-152	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG012044t1
Entrez Gene	18603887

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]