PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012252t1
Common NameTCM_012252
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 382aa    MW: 43508.8 Da    PI: 8.8337
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012252t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.93.6e-381232683132
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec..eaesssssasnsssg.... 88 
                        k+drhski T++g+RdRR+Rls+e+a++fF Lqd+LG+dk+s t+eWLl q+  +ik+l++++ s+  ++c     + +s +s+s+ g    
  Thecc1EG012252t1 123 SKRDRHSKINTAKGPRDRRMRLSLEVAREFFGLQDMLGYDKASRTVEWLLIQSRSEIKKLARSKLSQMnNSCsvA--AAKSPSSTSE-Gevvs 212
                       69*************************************************************444331444331..2222222112.23455 PP

               TCP  89 ............kaaksaakskksqksaasalnlakesrakarararertrekmri 132
                                   k ++s++++k +q ++ +++ la++ r+karara+ rt+ek + 
  Thecc1EG012252t1 213 gidkaavegsisKGKPSTKEKKVRQPRKITFRPLARDLREKARARAKARTKEKTMR 268
                       666667778886444444444444444445699999****************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-39123267IPR005333Transcription factor, TCP
PROSITE profilePS5136931.817124182IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.753248265IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MFPSNINRYN DPIAYIDHSI LHRHFPNDII SFSKPEDLPL SLFHFPSPCY NHCELELEED  60
YGVFLPQHHD LLLHQQTLTT DNSVSDTIII MPDHSSKNEG STINCTRKSH NATDQQMEKK  120
RSSKRDRHSK INTAKGPRDR RMRLSLEVAR EFFGLQDMLG YDKASRTVEW LLIQSRSEIK  180
KLARSKLSQM NNSCSVAAAK SPSSTSEGEV VSGIDKAAVE GSISKGKPST KEKKVRQPRK  240
ITFRPLARDL REKARARAKA RTKEKTMRAQ RFDESKLCDD TRNDDLNKFS YWSSVETGEE  300
SGSQHHIRNP SFQAAVAEVK ELSSRDREHI RIHGDMGDES LAIMNNSTFN CLQNAGIHQE  360
HQLTSFLSFG KSWDCYNNQS L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036425.20.0PREDICTED: transcription factor DICHOTOMA
RefseqXP_017972376.10.0PREDICTED: transcription factor DICHOTOMA
TrEMBLA0A061FUJ10.0A0A061FUJ1_THECC; TCP family transcription factor, putative isoform 1
STRINGEOY209260.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.26e-21TCP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]