PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012333t1
Common NameTCM_012333
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CO-like
Protein Properties Length: 432aa    MW: 48066.5 Da    PI: 4.8705
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012333t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box279.5e-091659340
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  Thecc1EG012333t1 16 ARACDGCLRKRARWYCAADDAFLCQGCDTSVHSAnqlasrHERV 59
                      578*****************************667888888876 PP
2CCT68.22.3e-23377420144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Thecc1EG012333t1 377 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 420
                       9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6371461IPR000315B-box-type zinc finger
SMARTSM003361.3E-101461IPR000315B-box-type zinc finger
PfamPF006432.3E-71659IPR000315B-box-type zinc finger
CDDcd000212.03E-91761No hitNo description
PROSITE profilePS5101716.083377419IPR010402CCT domain
PfamPF062035.8E-18377419IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MTTDKKAANA MGGKTARACD GCLRKRARWY CAADDAFLCQ GCDTSVHSAN QLASRHERVR  60
LETASFSKFS ASVTNRTNQD APPAWHQGFT RKARTPRQNK SMLGQQKDEG KVFSLNPLDP  120
VVPEIGSEDG SVDENEEQLL CRVPVLNPFA AELCNMVTSD GDEVAMVNED GNFVIDDYER  180
EGTCELDDGL HGFLPSDMDL ADFAADVENL LGVGLDDDAC CDTKGIELLH SKEEDGSNVL  240
HEGKIVKVKD EEEVEGITAC CFDSAFDVTR ESLNWSYDYE SPTIGEEEEE KVLPATETTT  300
MNGESKAEMK RNMLLRLNYE SVITAWARQG SPWTAGSRPE FNPDDFMGSN LKEGHHLSGG  360
IGGIYSLQGR GNTDGEREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT  420
SFVGTAFTYI N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387403RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036519.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD08e-98COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A061FU460.0A0A061FU46_THECC; Transcription factor, putative
STRINGEOY210200.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-100B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]