PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG012338t1

Common Name

TCM_012338

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 253aa MW: 27075.6 Da PI: 7.8273

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG012338t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.2	1.2e-28	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++l++a pe+ r+ +++sl+yeA+ r+ +Pv+G+vg++++++++l+ Thecc1EG012338t1 4 SCNGCRVLRKGCTESCSIRPCLqwiatAQSQANATLFLAKFYGRAGLINLINAGPENLRPGIFKSLLYEACGRIVNPVHGSVGLMWSGSWHLC 96 6*******************9999888999********************************************************* PP DUF260 89 qlkaelallke 99 +++++++l+++ Thecc1EG012338t1 97 EAAVDAVLRGS 107 *99988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.558	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MRMSCNGCRV LRKGCTESCS IRPCLQWIAT AQSQANATLF LAKFYGRAGL INLINAGPEN 60 LRPGIFKSLL YEACGRIVNP VHGSVGLMWS GSWHLCEAAV DAVLRGSPIN KVSSELSDSS 120 PHLKSSCDIR HVSKEKNSDD GLRKIKSRGR FKRSAWKPKA QVEKEVCHES VSHESGLSQR 180 RSPGGDGAEG DTVSVETVEA SLAKADELAD GSDLELDLTL GFEPSPRKRA NSINGCDDAT 240 CGVQLDLGQG SC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007036523.2	0.0	PREDICTED: LOB domain-containing protein 40
Swissprot	Q9M886	3e-72	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A061G1V5	0.0	A0A061G1V5_THECC; LOB domain-containing protein 41, putative
STRING	EOY21024	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18027	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-74	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Thecc1EG012338t1
Entrez Gene	18604122

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]