PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012489t1
Common NameTCM_012489
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23710.2 Da    PI: 7.3845
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012489t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.81.4e-183677243
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      + e ksn +vtfskRr+g++KKA+EL++L +a++ +i++s++
  Thecc1EG012489t1 36 QLEKKSNLHVTFSKRRKGLFKKASELCILSGAKIGIIVLSPS 77
                      6789************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-232788IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.4232787IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-222899IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-132949IPR002100Transcription factor, MADS-box
PfamPF003192.9E-183883IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-134964IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-136485IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLNQQKMTNQ CCGDGEEGKK KPAGKTKGRQ RIEIKQLEKK SNLHVTFSKR RKGLFKKASE  60
LCILSGAKIG IIVLSPSPRE KPFCFGHPDI DTVLDQYLSG NPAFDDQDYA ALTDLPGFEE  120
IDKQYEESLK ELEKEKKRGK EIEQAKNVEN NGGFWWDEAI DGMRVEELEA YMKAMEKLKK  180
NLILRASALM MANVMETVVQ ADHSYGFGGS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036631.11e-155PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A061FW871e-154A0A061FW87_THECC; Mads box protein, putative
STRINGEOY211321e-155(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-31AGAMOUS-like 62
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]