PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012631t1
Common NameTCM_012631
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 238aa    MW: 26827.8 Da    PI: 8.3633
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012631t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-154895148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++ Ed++l+d+++++G g+W+  ++  g+ R++k+c++rw +yl
  Thecc1EG012631t1 48 KGAWSKLEDQKLIDYIQKHGEGCWRYLPQAAGLLRCGKSCRLRWVNYL 95
                      79******************************99************97 PP
2Myb_DNA-binding54.72.3e-17101145147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++ ++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++
  Thecc1EG012631t1 101 RGNFGEDEEELIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTH 145
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-223997IPR009057Homeodomain-like
PROSITE profilePS5129413.2354395IPR017930Myb domain
SuperFamilySSF466891.35E-2747142IPR009057Homeodomain-like
SMARTSM007174.9E-114797IPR001005SANT/Myb domain
PfamPF002491.1E-134895IPR001005SANT/Myb domain
CDDcd001674.78E-95095No hitNo description
PROSITE profilePS5129426.50396150IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-2698150IPR009057Homeodomain-like
SMARTSM007171.7E-16100148IPR001005SANT/Myb domain
PfamPF002491.1E-15101145IPR001005SANT/Myb domain
CDDcd001671.11E-11103146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MPIPSLAFSP DFGPLLSSDL ICYLHWGFSL FFLFPMRKPC CEKKETNKGA WSKLEDQKLI  60
DYIQKHGEGC WRYLPQAAGL LRCGKSCRLR WVNYLRPDLK RGNFGEDEEE LIIKLHALLG  120
NRWSLIAGRL PGRTDNEVKN YWNTHIKRKL LQKGIDPNNR KLVLSSISIA KSKMSNESNS  180
STVDSGSDDS NQDMKFASGS ESNTMSSLPD LNLDLTIAPP PPLPLMEERQ LINLDSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28481507108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036734.11e-175PREDICTED: myb-related protein 308
SwissprotP813937e-78MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A061FUQ81e-173A0A061FUQ8_THECC; R2R3 MYB C2 repressor 2 protein
STRINGEOY212351e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-78myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]