PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012755t1
Common NameTCM_012755
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WOX
Protein Properties Length: 358aa    MW: 40556.4 Da    PI: 7.8751
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012755t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-2174133357
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       +R+++t+eql++Leel+++ +r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  Thecc1EG012755t1  74 SRWNPTPEQLRTLEELYRRgTRTPTADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 133
                       7*****************99**************************************97 PP
2Wus_type_Homeobox115.82.1e-3773135365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
   Thecc1EG012755t1  73 SSRWNPTPEQLRTLEELYRRGTRTPTADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 135
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.4E-571138IPR001356Homeobox domain
PfamPF000463.0E-1974133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-974133IPR009057Homeodomain-like
SuperFamilySSF466892.4E-1274140IPR009057Homeodomain-like
CDDcd000862.32E-675135No hitNo description
PROSITE profilePS5007110.99779134IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MWMMGYNDSA EFNMPDSFNG RKLRPLIPRP IPSANNPPCL SRINGTDFFA LNHHLTTGDQ  60
NKRDFNTQPV VVSSRWNPTP EQLRTLEELY RRGTRTPTAD QIQHITAQLR RYGKIEGKNV  120
FYWFQNHKAR ERQKRRRQME SAPDEHSRVD IDIFERKDSG ANKTGYEVEQ TKTWTVPTNC  180
STLAEDSVSI QTAAKAAGAE CRADGWIQFD EGELQHRRNI VERNGAWQKM QLSYSCPPST  240
HQLINNSTAA AATNTATPTA PIPTAIRRMD PKQLIKTHDL NIFISPCREN GNVLDHLNSA  300
CRNEEDGPGE FQTLQLFPLR SGDGIDNVKE KENEISVAAV TASLTPYPFF EFLPLKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036796.20.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A061FWQ30.0A0A061FWQ3_THECC; WUSCHEL, putative isoform 1
STRINGEOY212980.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-59WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]