PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012755t2
Common NameTCM_012755
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WOX
Protein Properties Length: 359aa    MW: 40627.5 Da    PI: 7.8751
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012755t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-2174133357
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       +R+++t+eql++Leel+++ +r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  Thecc1EG012755t2  74 SRWNPTPEQLRTLEELYRRgTRTPTADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 133
                       7*****************99**************************************97 PP
2Wus_type_Homeobox115.82.1e-3773135365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
   Thecc1EG012755t2  73 SSRWNPTPEQLRTLEELYRRGTRTPTADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 135
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.4E-571138IPR001356Homeobox domain
SuperFamilySSF466892.44E-1274140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-974133IPR009057Homeodomain-like
PfamPF000463.1E-1974133IPR001356Homeobox domain
CDDcd000862.22E-675135No hitNo description
PROSITE profilePS5007110.99779134IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MWMMGYNDSA EFNMPDSFNG RKLRPLIPRP IPSANNPPCL SRINGTDFFA LNHHLTTGDQ  60
NKRDFNTQPV VVSSRWNPTP EQLRTLEELY RRGTRTPTAD QIQHITAQLR RYGKIEGKNV  120
FYWFQNHKAR ERQKRRRQME SAPDEHSRVD IDIFERKDSA GANKTGYEVE QTKTWTVPTN  180
CSTLAEDSVS IQTAAKAAGA ECRADGWIQF DEGELQHRRN IVERNGAWQK MQLSYSCPPS  240
THQLINNSTA AAATNTATPT APIPTAIRRM DPKQLIKTHD LNIFISPCRE NGNVLDHLNS  300
ACRNEEDGPG EFQTLQLFPL RSGDGIDNVK EKENEISVAA VTASLTPYPF FEFLPLKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036796.20.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A061FW510.0A0A061FW51_THECC; WUSCHEL, putative isoform 2
STRINGEOY212980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-59WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]