PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG013524t1

Common Name

TCM_013524

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 301aa MW: 32377.1 Da PI: 10.1509

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG013524t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.7e-14	105	149	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Thecc1EG013524t1 105 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 149 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.836	98	154	IPR017930	Myb domain
SuperFamily	SSF46689	3.96E-17	100	155	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-17	101	152	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	102	152	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-11	104	149	IPR009057	Homeodomain-like
CDD	cd00167	1.68E-9	105	150	No hit	No description
Pfam	PF00249	1.7E-11	105	149	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MPASTCASAS SSTANSTANG GSGGGGEIML FGVRVVVDSM RKSVSMNNLS QYEQPHASNS 60 NNKINEKSNN NNNNKGDDNV TAGYASADDA VPQSTGNRER KRGVPWTEEE HKLFLLGLQK 120 VGKGDWRGIS RNFVKTRTPT QVASHAQKYF LRRNNLNRRR RRSSLFDITT DTVAAVPMEE 180 EQVHPLGNTT QPSEINGFPM MPTAFPMTVN PPVPMENLTL GQGNRSDNNA TAKLIRPVPI 240 SPAPLASDLN LNLNSVVGPS PLSLKLSLQP EQKDSSSRHS AFQVMPSFSN GDSNSIISVA 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007037108.2	0.0	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	3e-77	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A061G3L8	0.0	A0A061G3L8_THECC; Homeodomain-like superfamily protein, putative
STRING	EOY21609	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.1	3e-61	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG013524t1
Entrez Gene	18604520

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]