PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014040t1
Common NameTCM_014040
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Dof
Protein Properties Length: 221aa    MW: 25253.9 Da    PI: 6.4008
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014040t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.52.5e-37133193262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++k+l+cprC+s++tkfCyynny+++qP +fCkaC+ryWt+ G++rn+PvG+grrknk+s 
  Thecc1EG014040t1 133 PDKILPCPRCNSMDTKFCYYNNYNINQPHHFCKACQRYWTTSGTMRNMPVGAGRRKNKNSA 193
                       7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-29128190IPR003851Zinc finger, Dof-type
PfamPF027012.8E-30135191IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.102137191IPR003851Zinc finger, Dof-type
Gene3DG3DSA:2.20.25.103.1E-4137177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MQESKDHVIK LFGQKIHLPT DGEISTISAN DFDKAKCGNR VVVVEEEEEE EDEEEKEKTE  60
QDSLAEKTTK TGQEDDTPPS NTKEATNPST SPEPNVNHKT PSIDEETKKT KTGKTDKEQS  120
DATNSQKKTL KKPDKILPCP RCNSMDTKFC YYNNYNINQP HHFCKACQRY WTTSGTMRNM  180
PVGAGRRKNK NSASHYRHIS IYEWSSIDVV NYVLYIVDRW *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973546.11e-112PREDICTED: LOW QUALITY PROTEIN: cyclic dof factor 3
TrEMBLA0A061FXT41e-163A0A061FXT4_THECC; Cycling DOF factor 2, putative
STRINGEOY218831e-164(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.11e-45cycling DOF factor 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]