PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014051t2

Common Name

TCM_014051

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

M-type_MADS

Protein Properties

Length: 371aa MW: 41766.4 Da PI: 6.5746

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014051t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.3	9.6e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tg+ Thecc1EG014051t2 9 KRLESTSNRQVTYSKRRTGILKKAKELSILCDIDIILLMFSPTGR 53 689****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.343	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.0E-31	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.06E-27	2	82	No hit	No description
SuperFamily	SSF55455	2.09E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRTGILK KAKELSILCD IDIILLMFSP TGRPTLFHGE 60 HSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFIGAT YEMNNEVSML 120 QAQLTEVHKR LSYWSNPDKI DNIEHLRQME DILRESIERI RMHKENFGKH HLMPLECTSQ 180 FQNGIPLPMM IGGVQEAQPV TWLPNNDNQH MLLHNEPSFL SHRDAECSAD GSFAGYSGFF 240 GSGKQIEIGS SGQVDNVVQE SSALNELGSN ACLSLQLGEQ YLYPPYSASN LQDDEKLKPE 300 MEVNLPGNPA VYQVVSNFEI PRPMYNGGPQ ARISSSGPCG IMMFDGNSYH QQTKSTFMNQ 360 TPPSGELHNL *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YSKRRTGILK KAKELSILCD IDIILLMFSP TGRPTLFHGE  60
HSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFIGAT YEMNNEVSML  120
QAQLTEVHKR LSYWSNPDKI DNIEHLRQME DILRESIERI RMHKENFGKH HLMPLECTSQ  180
FQNGIPLPMM IGGVQEAQPV TWLPNNDNQH MLLHNEPSFL SHRDAECSAD GSFAGYSGFF  240
GSGKQIEIGS SGQVDNVVQE SSALNELGSN ACLSLQLGEQ YLYPPYSASN LQDDEKLKPE  300
MEVNLPGNPA VYQVVSNFEI PRPMYNGGPQ ARISSSGPCG IMMFDGNSYH QQTKSTFMNQ  360
TPPSGELHNL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	1e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007037391.2	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_017973210.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_017973211.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_017973212.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	1e-116	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A061FX90	0.0	A0A061FX90_THECC; AGAMOUS-like 65, putative isoform 2
STRING	EOY21890	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-105	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Thecc1EG014051t2
Entrez Gene	18604720

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]