PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014477t1

Common Name

TCM_014477

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YB

Protein Properties

Length: 217aa MW: 24424.1 Da PI: 5.0312

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014477t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	67.8	2e-21	78	154	10	86
NF-YB 10 ianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 a +++i+k++lP + ++++da++++ ec +efi +++se++d c+re+++ti+++ +l al lGf +y+e++ + Thecc1EG014477t1 78 HATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNDVCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAA 154 58899*******************************************************************98654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.0E-35	74	200	IPR009072	Histone-fold
SuperFamily	SSF47113	2.1E-32	78	202	IPR009072	Histone-fold
Pfam	PF00808	1.8E-18	79	139	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEPMDIVGKS KEDASLPKGV NSLSNFLKKA IVGWLLYVFV FKLQRRFRAR ASMASLSWER 60 VQVFGQMYLK LVDVFAFHAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESND 120 VCNREDKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKI ETMQDSLKGG KWSNGAEMTE 180 EEAVAEQQRM FAEARARMNG GAVAPKQPDP DPSLES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-31	73	195	13	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007037755.2	7e-98	PREDICTED: protein Dr1 homolog isoform X1
Swissprot	P49592	1e-79	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A061FXL2	1e-159	A0A061FXL2_THECC; Nuclear factor Y isoform 1
STRING	EOY22255	1e-160	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3828	26	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	5e-82	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Thecc1EG014477t1
Entrez Gene	18604965

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]