PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014477t2

Common Name

TCM_014477

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YB

Protein Properties

Length: 157aa MW: 17371.7 Da PI: 4.3075

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014477t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76.3	4.7e-24	11	94	3	86
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se++d c+re+++ti+++ +l al lGf +y+e++ + Thecc1EG014477t2 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNDVCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAA 94 6899***************************************************************************98654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.9E-40	8	140	IPR009072	Histone-fold
SuperFamily	SSF47113	3.26E-36	12	142	IPR009072	Histone-fold
Pfam	PF00808	1.9E-21	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESND 60 VCNREDKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKI ETMQDSLKGG KWSNGAEMTE 120 EEAVAEQQRM FAEARARMNG GAVAPKQPDP DPSLES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-34	12	135	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007037755.2	1e-112	PREDICTED: protein Dr1 homolog isoform X1
Swissprot	P49592	7e-94	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A061FYD7	1e-111	A0A061FYD7_THECC; Nuclear factor Y, subunit B13 isoform 2
STRING	Gorai.001G064700.1	1e-110	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	3e-96	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Thecc1EG014477t2
Entrez Gene	18604965

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]