PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014574t1

Common Name

TCM_014574

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 520aa MW: 57510.8 Da PI: 6.4608

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014574t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373	3.8e-114	147	518	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal.ppsetseknsseelaalklfsevsPil 91 lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++La rla ++ +++ + p+ + + +s+++ al+l +e++P + Thecc1EG014574t1 147 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLALVQPlGTVGLVaPVMNIMDISSDKKEEALRLVYEICPHI 239 689************************************************9944413333332333444444899999******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 +f+h++aN+ Ilea+ege+ vH++D++++ +G QW L+q+La+R++++p +lRiT+vg s ++ + +g+ L+ +A+ lg+++ef+ Thecc1EG014574t1 240 QFGHFVANSSILEAFEGESFVHVVDLGMTlglpHGHQWRHLIQSLANRAGKAPsRLRITAVGL----SDHRFHIIGQELEAYAKDLGMNLEFS 328 *********************98873333788*********877769****....99******************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 v v ++le+l++e+++v gE+l+Vn++lqlh +++es + +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+ Thecc1EG014574t1 329 V-VKSNLENLRPEDIKVFDGEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLD 417 9.799**************************88877777...8****************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364 a lp+ + r+k+E++++++ei+n+v+ceg r+erhe++ +Wr+r+++aGF+++pl+ +++qak l k k +gy+v e++g+lvlgWk+ Thecc1EG014574t1 418 AMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPGRVERHERVDQWRRRMSRAGFQAAPLR--MMTQAKQWLGKNKvCEGYTVVEDKGCLVLGWKS 508 ****************************************************96..89*******9*************** PP GRAS 365 rpLvsvSaWr 374 +p+v++S+W+ Thecc1EG014574t1 509 KPIVAASCWK 518 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.739	121	499	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-111	147	518	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MGHGFLANEF QKTDRIDEVI GLDLELSAMA FCYQPFMPIM GDNACGWSLP FSGEIRDTKR 60 LRRTISIPES IGSSGSLSSG GNSDSSLSRS GSTSSLNSFS RLHFRDHVLT YNQRYLAAEA 120 VEEAAAAMIS SEESGGEEDE TADGMRLVQL LIACAEAVAC RDKSHASALL SELRANALVF 180 GSSFQRVASC FVQGLADRLA LVQPLGTVGL VAPVMNIMDI SSDKKEEALR LVYEICPHIQ 240 FGHFVANSSI LEAFEGESFV HVVDLGMTLG LPHGHQWRHL IQSLANRAGK APSRLRITAV 300 GLSDHRFHII GQELEAYAKD LGMNLEFSVV KSNLENLRPE DIKVFDGEVL VVNSILQLHC 360 VVKESRGALN SVLQMIHELS PKVLVLVEQD SSHNGPFFLG RFMEALHYYS AIFDSLDAML 420 PKYDTRRAKM EQFYFAEEIK NIVSCEGPGR VERHERVDQW RRRMSRAGFQ AAPLRMMTQA 480 KQWLGKNKVC EGYTVVEDKG CLVLGWKSKP IVAASCWKC*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MGHGFLANEF QKTDRIDEVI GLDLELSAMA FCYQPFMPIM GDNACGWSLP FSGEIRDTKR  60
LRRTISIPES IGSSGSLSSG GNSDSSLSRS GSTSSLNSFS RLHFRDHVLT YNQRYLAAEA  120
VEEAAAAMIS SEESGGEEDE TADGMRLVQL LIACAEAVAC RDKSHASALL SELRANALVF  180
GSSFQRVASC FVQGLADRLA LVQPLGTVGL VAPVMNIMDI SSDKKEEALR LVYEICPHIQ  240
FGHFVANSSI LEAFEGESFV HVVDLGMTLG LPHGHQWRHL IQSLANRAGK APSRLRITAV  300
GLSDHRFHII GQELEAYAKD LGMNLEFSVV KSNLENLRPE DIKVFDGEVL VVNSILQLHC  360
VVKESRGALN SVLQMIHELS PKVLVLVEQD SSHNGPFFLG RFMEALHYYS AIFDSLDAML  420
PKYDTRRAKM EQFYFAEEIK NIVSCEGPGR VERHERVDQW RRRMSRAGFQ AAPLRMMTQA  480
KQWLGKNKVC EGYTVVEDKG CLVLGWKSKP IVAASCWKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-60	154	517	26	378	Protein SCARECROW
5b3h_A	4e-60	154	517	25	377	Protein SCARECROW
5b3h_D	4e-60	154	517	25	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007037896.2	0.0	PREDICTED: DELLA protein RGL1
TrEMBL	A0A061FZS1	0.0	A0A061FZS1_THECC; GRAS family transcription factor
STRING	EOY22397	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16018	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-77	RGA-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG014574t1
Entrez Gene	18605049

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]