PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014729t3
Common NameTCM_014729
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 412aa    MW: 46450.6 Da    PI: 7.5675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014729t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09242289455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Thecc1EG014729t3 242 SHSLAERVRREKISERMKILQRLVPGC----DKVTGKALMLDEIINYVQSLQ 289
                       8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17236305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-10236293No hitNo description
PROSITE profilePS5088815.739238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16238303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6242289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
FSSLLSPDVY INLGIFDRHR PTFLDCYFWL PSSIISSLSL CLSHHFLETL HFPLFELQKP  60
LPHMAAFSFQ PHPFLLDSIF LPNTPTKVSG FMEEGNINSN CFSQFYPPEP IQESPLDPKF  120
HESSCLDHSS KLAHSDNEPS VTKKQSTDDS TVVDKLESGE QVTQNVTLTD RKRKTRSRTT  180
LNSAQSKDAK EGKSKKQRKR NDVLKNEKKE SKADKKDQKK ATEEPPTGYI HVRARRGQAT  240
DSHSLAERVR REKISERMKI LQRLVPGCDK VTGKALMLDE IINYVQSLQN QVEFLSMKLA  300
SVNPMFYDFG VDLEALMVRP ERVNGSIASP LPSLQQCNPT QPTAFADTTT TTFVPANNYP  360
LLDASAALLL QQGQRPNVFS QDNGSLLWDV EDQRQKFLNS SGLNDNLCCF H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038100.10.0PREDICTED: transcription factor bHLH137
RefseqXP_007038102.20.0PREDICTED: transcription factor bHLH137
TrEMBLA0A061FZV40.0A0A061FZV4_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3 (Fragment)
STRINGEOY226030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-55bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]