PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014751t1
Common NameTCM_014751
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 317aa    MW: 35861.1 Da    PI: 6.9487
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014751t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.73.6e-2438127181
          trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                       rWtkqe+ +Li+a+  +e+r r+++         +++p+W++vs++++++g++r+p qC+++w+nl ++++kik++e+++++e++s + +
  Thecc1EG014751t1  38 RWTKQETIVLIQAKLAVENRARARNtpfsiflsdQNEPKWDSVSSYCKQHGVSREPAQCQKRWSNLLGDFRKIKTWESQKKKEAESFWTM 127
                       8*********************976677777777*********************************************98888766654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.44531104IPR017877Myb-like domain
PfamPF138371.0E-1237128No hitNo description
Gene3DG3DSA:1.10.10.601.3E-438104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTGPDSINMQ ENASSQLDEA KERPFHATDC RTNTRHARWT KQETIVLIQA KLAVENRARA  60
RNTPFSIFLS DQNEPKWDSV SSYCKQHGVS REPAQCQKRW SNLLGDFRKI KTWESQKKKE  120
AESFWTMRSN SRRERKLPGL FDREVYDILD GRGFPMAATP LAHVTVMTEI DSGSGDQVAK  180
AAATAEEEQK NENEEADEEI GQENEKETIA MRSPAKTVNT LSPISGEAKE KYPGSTARTG  240
SMIQEGLKRR RLSIDGSEDI NWAKVLERNS NMLSSQLESQ NINYQLDRDQ RKEQADSLVA  300
ALNKLTDVLL RIVNKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038139.20.0PREDICTED: trihelix transcription factor ASR3
TrEMBLA0A061FYP70.0A0A061FYP7_THECC; Homeodomain-like superfamily protein, putative
STRINGEOY226400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-69Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]