PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG014841t1

Common Name

TCM_014841

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 248aa MW: 28175.8 Da PI: 8.4201

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG014841t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	7.9e-07	88	107	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C+ Gd C FaHg Thecc1EG014841t1 88 CPAFRN-GRCQKGDACEFAHG 107 556665.*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.573	82	109	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-4	82	108	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.32E-5	83	112	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.7E-5	88	107	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-5	88	110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	20	117	140	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MLKGVNPNFI NFAEQQLISG LNLTQRAQYN NAIDEAIYGS DEFRMYAYKI KRCTRMRSHD 60 WTECPYAHRG EKAQRRDPRK VPYTAIACPA FRNGRCQKGD ACEFAHGVFE YWLHPARYRT 120 RACNAGTFCQ RKVCFFAHTP DQLRAESKCK CPFAYKGRMN GGDELLMGIG SGGGEGSTSI 180 QAHDFSVPFA STVNRDCCSF EGFSDFLRRL RAFKIREEEE RAMRNGGGFE VSDSDLPHLD 240 WISELVK*

Functional Description ? help Back to Top
Source	Description
UniProt	Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269\|PubMed:9501112}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038268.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 54
Swissprot	O65036	9e-75	C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBL	A0A061G6X0	0.0	A0A061G6X0_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
STRING	EOY22769	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11527	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07500.1	2e-74	C3H family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG014841t1
Entrez Gene	18605283

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]