PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014850t1
Common NameTCM_014850
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 225aa    MW: 25221.5 Da    PI: 5.2175
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014850t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-17103154256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdps   k  r++lg+f +  +Aaka++ a+ k++g+
  Thecc1EG014850t1 103 HYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFESDVDAAKAYDCAAFKMRGH 154
                       7********.**********854..34**********99**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.8E-31102162IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22103162IPR016177DNA-binding domain
PfamPF008471.2E-12103154IPR001471AP2/ERF domain
PROSITE profilePS5103223.762103161IPR001471AP2/ERF domain
SMARTSM003802.4E-35103167IPR001471AP2/ERF domain
PRINTSPR003676.6E-13104115IPR001471AP2/ERF domain
CDDcd000181.03E-21111161No hitNo description
PRINTSPR003676.6E-13143163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MATIEESTTL EFIRQHLLGD FASADAFITS LDFGLSQLQP IIKPENPIPE LEHDSPISDP  60
NNQIPDIFSC DVKPEVVDLE SPRSIISVYN PEPKLSLCEE RRHYRGVRRR PWGKFAAEIR  120
DPSRKGSRVW LGTFESDVDA AKAYDCAAFK MRGHKAILNF PLEAGEAGPP ASTGRKRRRV  180
NGIKLPECDV MSPESIELAW EVKEEEGEPH YLNQLSPLTR RQVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-28102162161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-28102162464ATERF1
3gcc_A2e-28102162464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178RKRRR
2175179KRRRV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038277.21e-163PREDICTED: ethylene-responsive transcription factor ERF107
SwissprotQ9LY056e-56EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A061G0871e-164A0A061G087_THECC; Ethylene-responsive element binding factor, putative
STRINGEOY227781e-165(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.17e-48ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]