PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014892t1
Common NameTCM_014892
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 288aa    MW: 32384.2 Da    PI: 9.2713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014892t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-17112161255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a  +++g
  Thecc1EG014892t1 112 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVASMAIKG 161
                       69****998.**********843...6*******************99887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-12112161IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-21112171IPR016177DNA-binding domain
PROSITE profilePS5103222.774112169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31112171IPR001471AP2/ERF domain
SMARTSM003801.3E-35112175IPR001471AP2/ERF domain
PRINTSPR003671.1E-10113124IPR001471AP2/ERF domain
CDDcd000186.71E-30113171No hitNo description
PRINTSPR003671.1E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MYRTSEGRPD FNIAKFQNSD ESPTSAGANS ATLEYKGHGD AKRFFFVTPL CSPSDSCSIN  60
TFAFASSLAF MDLKYIKQSF RKKRSIREKR STEANERGEK SFKKGKAYRH PTYRGVRMRS  120
WGKWVSEIRE PRKKSRIWLG TFPTAEMAAR AHDVASMAIK GNSAYLNFPE SAHELPRPAS  180
SARRDIQEAA NKAAYAMVDQ HNAMIEVKTV PSQDEMPAPQ SPSSTTMSCE TQGSPSSQSV  240
DSDSMWFDLP DLSLEANSSH RFGYTSWWQQ AGIDIEFKFE ETMGWDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-17104169672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972685.11e-158PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ76e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A061G0V20.0A0A061G0V2_THECC; Ethylene response factor 2
STRINGEOY228370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]