PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015034t1

Common Name

TCM_015034

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 257aa MW: 28519.4 Da PI: 7.5043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015034t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.5e-10	64	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas..................kapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr+llP + + ++K ++ Av YIk+Lq Thecc1EG015034t1 64 KKLMHRDIERQRRQEMATLYASLRTLLPLEYikklrsgfaiimslgllfMGFQGKRAISDHMNGAVCYIKDLQ 136 5789***********************777*************9999999*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.19E-6	61	139	No hit	No description
SuperFamily	SSF47459	1.44E-10	62	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-8	62	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.496	63	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-7	64	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MDQMFFQVSS NSDPQNTTPQ DKNLDYVLPV DGTSNLHSNM RSRGQQRKLL ASDKSENSND 60 DNKKKLMHRD IERQRRQEMA TLYASLRTLL PLEYIKKLRS GFAIIMSLGL LFMGFQGKRA 120 ISDHMNGAVC YIKDLQKRID ELSAKRNELK KLSNSSCFDQ GMSSNDSFPS SAVVRQSLNG 180 VEVVISTGLG AQALTLSRVL ELLLEEGLDV VSCISTRIDG GLIHTIQSEV SDLTYVTVPG 240 LQQKLNEEIS SLSQIS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038520.1	0.0	PREDICTED: transcription factor bHLH120 isoform X1
TrEMBL	A0A061G0D3	0.0	A0A061G0D3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY23021	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	6e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015034t1
Entrez Gene	18605452

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]