PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015035t1

Common Name

TCM_015035

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 244aa MW: 27073.6 Da PI: 9.0173

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015035t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.6e-11	73	124	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + + +e+Er+RR+++ + + +Lr+llP + ++K ++ +Av+YIk+L+ Thecc1EG015035t1 73 KIMRKEIERQRRQQMAKLYGKLRSLLPLeS---IQGKRAVSDHMNEAVNYIKYLK 124 66789*********************66...99****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.07E-12	69	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.957	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.23E-8	72	128	No hit	No description
Pfam	PF00010	3.6E-8	74	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-9	75	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-4	77	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MFPSHQSDDF LYEISDIPHY QDLMQQNLTI SGEGSAGGSN LTQRMAKGKR HKKFVAAANS 60 NDGNAAANND AKKIMRKEIE RQRRQQMAKL YGKLRSLLPL ESIQGKRAVS DHMNEAVNYI 120 KYLKKKIQEL SVKRDKLKKL SNLSAFDQGS ASSSDNSSLI NCVAVHPYRG GVEIVINSGF 180 GDESWHLSAM MQAIRAEELD VVHCISSQTN EGFLHTIQSE VSDPAHRLDL PGLQSKLNDL 240 ISF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	139	DKLKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038521.2	0.0	PREDICTED: transcription factor bHLH36
TrEMBL	A0A061G1D2	1e-180	A0A061G1D2_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY23022	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17143	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	6e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015035t1
Entrez Gene	18605453

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]