PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015054t1

Common Name

TCM_015054

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

TCP

Protein Properties

Length: 350aa MW: 37489.8 Da PI: 6.521

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015054t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.1	2.2e-36	90	183	4	100
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssgkaa 91 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + +s + ++ Thecc1EG015054t1 90 PKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsvngtL----KIPTS----SGKQ 174 699***********************************************************99999554221110....11111....1111 PP TCP 92 ksaakskks 100 + ++k++ Thecc1EG015054t1 175 DGDLPRKRR 183 111112221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.7E-30	94	177	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.512	94	148	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MECNQNQTIE EIDESINNNT TIIIIEEQQQ QSNNTTPSFS PSEATVMDPN QPMKEEDLTD 60 TEPREFTNST LVHGLVPVMP AAQTNRSFVP KRPSKDRHTK VEGRGRRIRM PATCAARIFQ 120 LTRELGHKSD GETIRWLLEH AEPAIIEATG TGTVPAIAVS VNGTLKIPTS SGKQDGDLPR 180 KRRKRPSNSE FIDVNEHQSS VSSGLAPIAP VTYSSINVNS QGLVPLWPMG TFGVLPAAAG 240 GAPGSNQAQL WAIPATATPF FNVARRPISS FVSAMQPEVQ GSSDGTMGSS GVPSSNSGTT 300 SVAGVSSSSN GNSNSTTQML RDFSLEILDK RELQFLGRPA NHQTPCSKP*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MECNQNQTIE EIDESINNNT TIIIIEEQQQ QSNNTTPSFS PSEATVMDPN QPMKEEDLTD  60
TEPREFTNST LVHGLVPVMP AAQTNRSFVP KRPSKDRHTK VEGRGRRIRM PATCAARIFQ  120
LTRELGHKSD GETIRWLLEH AEPAIIEATG TGTVPAIAVS VNGTLKIPTS SGKQDGDLPR  180
KRRKRPSNSE FIDVNEHQSS VSSGLAPIAP VTYSSINVNS QGLVPLWPMG TFGVLPAAAG  240
GAPGSNQAQL WAIPATATPF FNVARRPISS FVSAMQPEVQ GSSDGTMGSS GVPSSNSGTT  300
SVAGVSSSSN GNSNSTTQML RDFSLEILDK RELQFLGRPA NHQTPCSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	185	PRKRRKRP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00007	PBM	Transfer from 495258	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973008.1	0.0	PREDICTED: transcription factor TCP19
Swissprot	Q9LT89	3e-85	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A061G0X0	0.0	A0A061G0X0_THECC; TCP family transcription factor, putative
STRING	EOY23048	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12583	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-84	TCP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015054t1
Entrez Gene	18605469

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]