PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015430t1

Common Name

TCM_015430

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 256aa MW: 29131.3 Da PI: 6.9268

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015430t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.6	4e-26	146	195	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++l++++kyF+ pi +AAke++v+lTvLK++CR+++I+RWPhRkiksl Thecc1EG015430t1 146 APLELDEIQKYFDFPISKAAKEMNVGLTVLKKRCRELNIMRWPHRKIKSL 195 6799********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	129	216	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-22	148	195	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDSTNLNFPK LVNAPDFDWF NFEENPFGTA LELLPFVVDG FYDFNDYNFN SLAPPGRINY 60 VEFKDFEDIS GDFALFENTS TLPSLHEDIL VDAKPLKAMV GPLGQYCGNI TNIGGSSETL 120 TVIQSDYGAS SGHGEQRRIS GRKRTAPLEL DEIQKYFDFP ISKAAKEMNV GLTVLKKRCR 180 ELNIMRWPHR KIKSLTALIN NVKELGLTNE IMMLEDHKRL LEKLPDMELT ERTKKLRQAC 240 FKANYKKRRS LAACY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007039079.2	0.0	PREDICTED: protein RKD4
TrEMBL	A0A061G154	0.0	A0A061G154_THECC; RWP-RK domain-containing protein, putative
STRING	EOY23580	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-45	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015430t1
Entrez Gene	18605785

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]