PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015456t2
Common NameTCM_015456
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Dof
Protein Properties Length: 230aa    MW: 25139.1 Da    PI: 9.8231
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015456t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.96e-403293263
            zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                      +++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Thecc1EG015456t2 32 NDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 93
                      6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-292890IPR003851Zinc finger, Dof-type
PfamPF027014.1E-343390IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2643690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDTAQWPQQG IGVVKPMEAS RPMVERRARP QNDQALNCPR CNSTNTKFCY YNNYSLSQPR  60
YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR SSSSSSSSSP SIASSKKVGD LTPPGPASQN  120
PKIHEGQDLN LAYPPPTEDY NSFSKFVEVP YGTGSKSNHH NSSSSPTSTH LNATELLKTG  180
RGLSSFMSIP VSDSNTVYSS GFPIQDLKAT LINRTEAGVL FIAFLLAWW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039117.21e-129PREDICTED: dof zinc finger protein DOF4.6 isoform X2
SwissprotQ8LAP85e-47DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A061G9A31e-169A0A061G9A3_THECC; F-box family protein, putative isoform 2
STRINGEOY236181e-132(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.13e-46Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]