PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015590t1
Common NameTCM_015590
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 469aa    MW: 52242.8 Da    PI: 7.7495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015590t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.16.3e-32161265199
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                       f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+ 
  Thecc1EG015590t1 161 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGEf 253
                       89***************************966778999*************************************************665999 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        + +l++ ++r+
  Thecc1EG015590t1 254 GKDRLFIDWRRR 265
                       999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-43150275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-30158266IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-26159248No hitNo description
PfamPF023622.0E-29161265IPR003340B3 DNA binding domain
PROSITE profilePS5086314.692161266IPR003340B3 DNA binding domain
SMARTSM010196.6E-23161266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGVYCPSLVF VFGSFWSKEE STDFLIVLRD PRGKVTIGAK KFMDFGSSGR EGFSEEEQMG  60
KGKLPISYSS SSSPSSSSSQ HKTQLVPPLS NCRWEKQPHP IYDSHHQMSP NWLGNRYEPE  120
EDNEATATAT ASEADSKRVD SDSTLELKSS ASANIEKEHM FDKVVTPSDV GKLNRLVIPK  180
QHAEKYFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA  240
GDIVSFQRGV GEFGKDRLFI DWRRRPDAPD PASFHPHQHH FSFHRSIPWS PLLMRPPPTG  300
RDHFHLSQIH PLNRNSYYGG YPTGSNVMNP AGGTMEPVFY WRSAVAAAAP QMGMGMGLGM  360
MEWQQQTGGV VEPIVFDSVP VVQGKAAAKR LRLFGVNMEC PTSASSDECE MLSPTTIANA  420
TMASQPPQLS SSSQHPLQLR LYNGTPLPPT DFLNANKGKA SMSLDLDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-651562663114B3 domain-containing transcription factor NGA1
5os9_B1e-651562663114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973586.10.0PREDICTED: B3 domain-containing transcription factor NGA1
TrEMBLA0A061G9U80.0A0A061G9U8_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOY238140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-69B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]