PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015625t3

Common Name

TCM_015625

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRF

Protein Properties

Length: 488aa MW: 53413.3 Da PI: 6.8701

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015625t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	189	232	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCsr+v +++k+CErH h++r rsrk++e Thecc1EG015625t3 189 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 232 79***************************************987 PP
2	QLQ	50.7	5.4e-18	134	167	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FTaaQ+q+L++Q ++yKy+ a+ PvPp+L ++ Thecc1EG015625t3 134 PFTAAQWQELERQTMIYKYMTASEPVPPDLPIPL 167 9****************************97666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.9E-11	133	169	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.113	134	169	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.7E-13	134	163	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.479	189	233	IPR014977	WRC domain
Pfam	PF08879	1.0E-19	190	232	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MGTRNNAFMG TEKGFGRDHC DVGLALRMQQ VEESCPNKSF MPMPHHSSHH QLSSSSSSCC 60 GDGFDGGACG GGPIVCNTSN QVPCTGDIYD VVGAASASAS AAAAGVFKSL HHHPFSADPS 120 FPNNCSAPVN ARAPFTAAQW QELERQTMIY KYMTASEPVP PDLPIPLTRN PSNVIKGSLE 180 LGFSGNSSDP EPWRCRRTDG KKWRCSRDVA PDQKYCERHS HKSRPRSRKP VELPNHSVNN 240 NDHKPHTHNM ASDKQPHQNP HFITDAHLLT SSFDQPRCLE WFIKGETTVP FAGNSNPEWQ 300 QFQTQGTKYG GNVSEYQQQY YKDHRLNLQA QHLNEQFSPD FASLGGASNL NQTHSQETRS 360 FIDAWSTAER EVAELDGFGS KRPLCSNEKL PLSSLTLSMS GGSGNNQEED DENSQMGAFD 420 IMGLAVENVR ALRPQMANPV SWMGSPPGGP FYPLCALVLQ VVKAQVRVTA ARAHEKTGEA 480 QLILTYG*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MGTRNNAFMG TEKGFGRDHC DVGLALRMQQ VEESCPNKSF MPMPHHSSHH QLSSSSSSCC  60
GDGFDGGACG GGPIVCNTSN QVPCTGDIYD VVGAASASAS AAAAGVFKSL HHHPFSADPS  120
FPNNCSAPVN ARAPFTAAQW QELERQTMIY KYMTASEPVP PDLPIPLTRN PSNVIKGSLE  180
LGFSGNSSDP EPWRCRRTDG KKWRCSRDVA PDQKYCERHS HKSRPRSRKP VELPNHSVNN  240
NDHKPHTHNM ASDKQPHQNP HFITDAHLLT SSFDQPRCLE WFIKGETTVP FAGNSNPEWQ  300
QFQTQGTKYG GNVSEYQQQY YKDHRLNLQA QHLNEQFSPD FASLGGASNL NQTHSQETRS  360
FIDAWSTAER EVAELDGFGS KRPLCSNEKL PLSSLTLSMS GGSGNNQEED DENSQMGAFD  420
IMGLAVENVR ALRPQMANPV SWMGSPPGGP FYPLCALVLQ VVKAQVRVTA ARAHEKTGEA  480
QLILTYG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ108541	4e-80	DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972255.1	0.0	PREDICTED: growth-regulating factor 8 isoform X2
TrEMBL	A0A061G394	0.0	A0A061G394_THECC; Growth-regulating factor 8, putative isoform 3
STRING	EOY23874	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	4e-34	growth-regulating factor 8

Link Out ? help Back to Top
Phytozome	Thecc1EG015625t3
Entrez Gene	18605960

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]