PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015625t4
Common NameTCM_015625
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRF
Protein Properties Length: 492aa    MW: 53801.7 Da    PI: 6.7826
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015625t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24193236144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+ep+rCrRtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  Thecc1EG015625t4 193 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 236
                       79***************************************987 PP
2QLQ50.75.5e-18138171235
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 
                       +FTaaQ+q+L++Q ++yKy+ a+ PvPp+L  ++
  Thecc1EG015625t4 138 PFTAAQWQELERQTMIYKYMTASEPVPPDLPIPL 171
                       9****************************97666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.9E-11137173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.113138173IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.7E-13138167IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.479193237IPR014977WRC domain
PfamPF088791.0E-19194236IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MGTRNNAFMG TEKGFGRDHC DVGLALRMQQ VEESCPNKSF MPMPHHSSHH QLSSSSSSCC  60
GDGFDGGACG GGPIVCNTSN QVPCTGDIYD VVGAASASAS AAAAGVFKSL HHHPFSADPS  120
FPNNCSGEMA APVNARAPFT AAQWQELERQ TMIYKYMTAS EPVPPDLPIP LTRNPSNVIK  180
GSLELGFSGN SSDPEPWRCR RTDGKKWRCS RDVAPDQKYC ERHSHKSRPR SRKPVELPNH  240
SVNNNDHKPH THNMASDKQP HQNPHFITDA HLLTSSFDQP RCLEWFIKGE TTVPFAGNSN  300
PEWQQFQTQG TKYGGNVSEY QQQYYKDHRL NLQAQHLNEQ FSPDFASLGG ASNLNQTHSQ  360
ETRSFIDAWS TAEREVAELD GFGSKRPLCS NEKLPLSSLT LSMSGGSGNN QEEDDENSQM  420
GAFDIMGLAV ENVRALRPQM ANPVSWMGSP PGGPFYPLCA LVLQVVKAQV RVTAARAHEK  480
TGEAQLILTY G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085414e-80DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039371.20.0PREDICTED: growth-regulating factor 8 isoform X1
RefseqXP_007039373.20.0PREDICTED: growth-regulating factor 8 isoform X1
RefseqXP_017972254.10.0PREDICTED: growth-regulating factor 8 isoform X1
TrEMBLA0A061G2R40.0A0A061G2R4_THECC; Growth-regulating factor 8, putative isoform 1
STRINGEOY238740.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.15e-37growth-regulating factor 8
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]