PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015674t1
Common NameTCM_015674
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27657.4 Da    PI: 5.4075
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015674t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.9e-25959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k ie+++nrqvtfsk r+g+lKKA+E+SvLCdae+ +iifsstg+l++y++
  Thecc1EG015674t1  9 KLIEDTTNRQVTFSKFRAGLLKKAHEVSVLCDAEIGLIIFSSTGELFDYCT 59
                      569**********************************************96 PP
2K-box553.5e-1979169999
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +++ +++ lq+ ++kL++e + L+ ++ hl G +L+sL++++L++LeqqLe s++k+R++K++ll+ q+++l +  ++++ en++L + +e
  Thecc1EG015674t1  79 TQTPQQSGLQNMSEKLRRESHCLELSLNHLNGSELNSLKIEDLEELEQQLEYSINKVRARKEQLLKLQMDNLERNVEKMEVENNQLCHWIE 169
                       5667788899****************************************************************************88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.903161IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-35160IPR002100Transcription factor, MADS-box
CDDcd002652.71E-38278No hitNo description
SuperFamilySSF554552.22E-27280IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-25323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-211157IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-253859IPR002100Transcription factor, MADS-box
PfamPF014863.6E-1782168IPR002487Transcription factor, K-box
PROSITE profilePS5129713.43584174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRSKIEMKL IEDTTNRQVT FSKFRAGLLK KAHEVSVLCD AEIGLIIFSS TGELFDYCTQ  60
PLRFHMEQII ERYQLAKGTQ TPQQSGLQNM SEKLRRESHC LELSLNHLNG SELNSLKIED  120
LEELEQQLEY SINKVRARKE QLLKLQMDNL ERNVEKMEVE NNQLCHWIEE KQASSRQQQV  180
PIEANMLEEK QQQVLNQFPF LGEEQPISVL QLVSLPPSRP YLGQPMQSNL QEANTHHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18173169MEF2C
5f28_B3e-18173169MEF2C
5f28_C3e-18173169MEF2C
5f28_D3e-18173169MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972721.11e-169PREDICTED: MADS-box protein defh21
TrEMBLA0A061GA581e-173A0A061GA58_THECC; MADS-box protein FBP24, putative isoform 1
STRINGEOY239341e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16860910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]