PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015870t2
Common NameTCM_015870
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 401aa    MW: 44873.4 Da    PI: 6.9467
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015870t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.42.9e-16741135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Thecc1EG015870t2  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                      ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-11546No hitNo description
CDDcd002027.95E-17654No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003204.8E-14741IPR000679Zinc finger, GATA-type
PfamPF139192.5E-9280365IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RVEPDDYEDH  60
RASRVKSISI NKNKEIKLLK RKPNHDTAVV APDYNQGFRK FVDEDTSNRS SSGSAISNSE  120
SCAQFGSGDA SDLTGPAQSN VWDSMVPSKK RTCVNRPKPS PVEKLTKDLY TILHEQSSYF  180
SGSSEEDLLL ESETPMVSVE IGHGSVLIRH PSSIAREEES EASSLSVENK QYSMNEAYSH  240
SSSFPTHNDS EGIKFSGHGF EKAKNPAGQG MQHEQLKRDK VQHEKSLILE SHKSPLCNID  300
LNDILNFEEF VKHITNEDQQ LLLKYLPPLD IVKLPDSLKS MFDSPQFKEN LCYFQQLLEE  360
GVFNISVPGV KAEDCKTLKR LALFNLTKSH WVERHNVLKV *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039698.10.0PREDICTED: GATA transcription factor 26
SwissprotQ8W4H11e-140GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A061G2Z70.0A0A061G2Z7_THECC; GATA transcription factor, putative isoform 2
TrEMBLA0A061GB100.0A0A061GB10_THECC; GATA transcription factor, putative isoform 1
STRINGEOY241990.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-118GATA transcription factor 26
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]