PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG015895t2

Common Name

TCM_015895

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

RAV

Protein Properties

Length: 314aa MW: 35750.6 Da PI: 9.8709

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG015895t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29.4	2e-09	33	81	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV + +W A+I ++ ++lg++ +eeAa a+++a++kl+ Thecc1EG015895t2 33 SRFRGVLALN-NSKWGARISLK-----YRAYWLGTYQVEEEAAIAYDRAALKLHR 81 6788885444.78***9993.....5***********************95 PP
2	B3	52.3	1e-16	152	244	1	83
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+ dv + + + +pk++a ++ g+ + s++lt++d+ r W+++++y+ + +++++tkGW++Fv n+L+ D+++ + Thecc1EG015895t2 152 FHKKLTQTDVAQIKGFHIPKEYALQYlpplgnssdgGQMRNDSVDLTFYDKFYRPWTFRYSYWCTTKTFLFTKGWRHFVAMNNLNIADTIMVY 244 89**************************9999985555699********************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	9.15E-15	33	91	IPR016177	DNA-binding domain
PROSITE profile	PS51032	15.198	34	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-13	34	89	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-8	34	95	IPR001471	AP2/ERF domain
CDD	cd00018	1.42E-14	37	90	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.7E-21	145	244	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.62E-18	150	244	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.15E-15	151	244	No hit	No description
Pfam	PF02362	2.3E-13	152	244	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-5	152	266	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.56	152	266	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MVGSSNSNKI IPCRRNSQYR MRSSCSSGRM SSSRFRGVLA LNNSKWGARI SLKYRAYWLG 60 TYQVEEEAAI AYDRAALKLH RSDSPLNFPW KIYTAQEKLF QSSYSNEEIM SMIKDKTYTS 120 NLTSFLARES LVRRSMSGCL INAKGISHQL LFHKKLTQTD VAQIKGFHIP KEYALQYLPP 180 LGNSSDGGQM RNDSVDLTFY DKFYRPWTFR YSYWCTTKTF LFTKGWRHFV AMNNLNIADT 240 IMVYGCAFVE EGQSRNFYMI DIHRNDAANY IVGRDAEQGI GTQPNIVDNG AHVDGISGVE 300 RKNGVKLFGI QIA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973293.1	0.0	PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120 isoform X1
TrEMBL	A0A061G322	0.0	A0A061G322_THECC; DNA-binding protein RAV1, putative isoform 2
STRING	EOY24230	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20740	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	2e-51	RAV family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG015895t2
Entrez Gene	18606197

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]