PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015930t1
Common NameTCM_015930
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 238aa    MW: 26529.6 Da    PI: 5.4007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015930t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24e-1859108255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  Thecc1EG015930t1  59 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKG 108
                       69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-3759122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3259117IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2259116IPR016177DNA-binding domain
PfamPF008473.7E-1259108IPR001471AP2/ERF domain
PROSITE profilePS5103223.56559116IPR001471AP2/ERF domain
PRINTSPR003679.4E-116071IPR001471AP2/ERF domain
CDDcd000183.82E-3360117No hitNo description
PRINTSPR003679.4E-118298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEVPLFAEFE TQSSASSSSS PLASESSTRF KSKKVEKVKN ANESKRKVKN DEVEGKHPTY  60
RGVRMRQWGK WVSEIREPRK KSRIWLGTFP TAEMAARAHD VAALTIKGKS AYLNFPEIAH  120
ELPRPVSASP KDIQAAAAKA ATLNYPKSHE VEAELSQVDQ MFPRSPASTV TSHDTQDSSS  180
SPLINNDDAF IDLPDLLLDM NHQIDEFWGS LSWQLPATDD PVENGFGYEE PCLWEYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1853116872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039780.21e-176PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9ZQP33e-56ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A061G3Z01e-176A0A061G3Z0_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY242811e-176(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.17e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]