PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015933t1
Common NameTCM_015933
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 257aa    MW: 29440.9 Da    PI: 8.6107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015933t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding621.2e-1983130148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd +l++++k +G ++WktIa + g+ R++k+c++rw++yl
  Thecc1EG015933t1  83 KGAWTAEEDRKLAEYIKIHGAKRWKTIAIKAGLSRCGKSCRLRWLNYL 130
                       79********************************************97 PP
2Myb_DNA-binding52.31.3e-16136181148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG015933t1 136 RGNISDEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 181
                       7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.23978130IPR017930Myb domain
SMARTSM007172.8E-1682132IPR001005SANT/Myb domain
SuperFamilySSF466891.98E-2982177IPR009057Homeodomain-like
PfamPF002491.3E-1783130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-2584137IPR009057Homeodomain-like
CDDcd001671.18E-1185130No hitNo description
PROSITE profilePS5129426.508131185IPR017930Myb domain
SMARTSM007174.3E-16135183IPR001005SANT/Myb domain
PfamPF002496.5E-15136181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-25138186IPR009057Homeodomain-like
CDDcd001671.14E-10140181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGWTLTDHSI LSHQAKLSHV LYSTSLLVFP VKVTLTXXXX XXXXXXXYLL LSLSLSLSLS  60
LCPFSQWQMA PKKDGVSKRV MNKGAWTAEE DRKLAEYIKI HGAKRWKTIA IKAGLSRCGK  120
SCRLRWLNYL RPNIKRGNIS DEEEDLILRL HKLLGNRWSL IAGRLPGRTD NEIKNYWNSH  180
LSKKINQEKT EQTSTSEQTV PQQTWETVQM VEEVAKGSDE NLELSFDANE FFDFSTQGCF  240
GLDWVNKFLE LDDQTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-308118525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8685581e-157JQ868558.1 Gossypium thurberi isolate D1 MYB2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972299.11e-152PREDICTED: myb-related protein 308
TrEMBLA0A061GB731e-179A0A061GB73_THECC; Myb domain protein 5
STRINGEOY242841e-180(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.16e-53myb domain protein 66
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]