PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015960t1
Common NameTCM_015960
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 326aa    MW: 35950.3 Da    PI: 8.155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015960t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05216238123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++C+k+F++ ++L  H r++
  Thecc1EG015960t1 216 YRCGNCKKVFRSYDTLDEHKRVC 238
                       9********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.12426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.762431IPR007087Zinc finger, C2H2
PfamPF139121.4E-5427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.44E-7216283No hitNo description
PROSITE profilePS501579.452216243IPR007087Zinc finger, C2H2
SMARTSM0035516216236IPR015880Zinc finger, C2H2-like
PfamPF139129.2E-4216236IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349261283IPR007087Zinc finger, C2H2
SMARTSM003550.17261283IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-10261283IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEKHKCKLCA RTFSNGRALG GHMKGHLATH PLPPKTTQHQ LGDRAESASS SSSSSGEEQE  60
LQEEKSREVV EEKSLVYGLR ENPRKSFRFA DPEFSFAVDS GSVVQDRESE TESRNPTRRR  120
SKRNRQVGTN ITTDEIKKPK LLRKPSLVES PTEPEPVSSV SDTSPEEDVA MCLMLLSRDV  180
WKTKNAEQKS VELLEESEEI DLNNKSELSK KIRGKYRCGN CKKVFRSYDT LDEHKRVCCE  240
TKNAGKVAAA AAVVVANNKI FQCPFCYRVF GSGQALGGHK RSHLLAAASS SNAAAANSTK  300
FDNKLIDLNL PAPSEDDEFS VVSDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021285057.10.0zinc finger protein ZAT9
TrEMBLA0A061G3990.0A0A061G399_THECC; C2H2-like zinc finger protein, putative
STRINGEOY243300.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17350611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-29C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]