PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016120t1

Common Name

TCM_016120

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRF

Protein Properties

Length: 288aa MW: 31421.7 Da PI: 8.7968

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016120t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.4	1.7e-25	170	214	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk +e+ Thecc1EG016120t1 170 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSRKLVEA 214 79****************************************997 PP
2	QLQ	46.5	1.1e-16	101	135	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a++PvP++Ll++i+k Thecc1EG016120t1 101 FTVFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWK 135 8888*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.1E-6	99	135	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.355	100	135	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.9E-11	101	134	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.824	170	214	IPR014977	WRC domain
Pfam	PF08879	2.0E-21	171	213	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MRKKSPINLL QGHTASVLFG SLNLFFSLIY AHTQEMEPQD SPLKIARFAD FGIGLTNLGD 60 SWNMESNRLS GGEGSPPIGL GLELGCGSGH RPTGFTKSCG FTVFQLQELQ LQSLIYKYME 120 AGLPVPHHLL LPIWKSFAGS VGGLHGNPYQ LYSGFLGCGP LHLEYKNGLD PEPGRCRRTD 180 GKKWRCSKEA VPDHKYCERH MHRGRQRSRK LVEASQATTS STGISRTNAD TNLSISLQVD 240 SSSSSGSHLS SSFIGFSPKS VLRGETLMVF VGLPGEKDEQ HGLHHLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM449705	3e-49	AM449705.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X253597.8, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972253.1	1e-167	PREDICTED: growth-regulating factor 10
TrEMBL	A0A061G555	0.0	A0A061G555_THECC; Growth-regulating factor 2
STRING	EOY24548	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16724	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	7e-36	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Thecc1EG016120t1
Entrez Gene	18606399

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]