PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016133t1
Common NameTCM_016133
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 255aa    MW: 28954.2 Da    PI: 8.8819
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016133t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-1078128355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         h  +Er+RR+++ + +  Lr  lP       ++K s ++   +Av+YIk+Lq
  Thecc1EG016133t1  78 IIHRDIERQRRQEMATLYRALRLQLPLeY---LKGKRSISDHMHEAVNYIKHLQ 128
                       5699***********************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.15E-873131No hitNo description
Gene3DG3DSA:4.10.280.104.1E-674124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1274146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.84375127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-779128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-4125146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDYVNSMFRS DQMADKFQFF PIPCRHTIQQ DELILIPSEE ANDLSNWGDY SQRRRKPARA  60
FLVNDVDGKS IDNKKKKIIH RDIERQRRQE MATLYRALRL QLPLEYLKGK RSISDHMHEA  120
VNYIKHLQKK ILKLSGRRDE LKSSSNSYAS RSVPESLQDS SEHSVMVRPC LAGVEVVIST  180
CLRQGLNLSS VLEVILAEGL SVVTCISTKV NESLMHTIVS EVNDGRNIEP SELQQKLTML  240
ATSSSELHLG MLAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040061.20.0PREDICTED: transcription factor bHLH36
SwissprotQ9FLI02e-42BH120_ARATH; Transcription factor bHLH120
TrEMBLA0A061G5T30.0A0A061G5T3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY245620.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.19e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]