PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG016134t1

Common Name

TCM_016134

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 260aa MW: 29074.2 Da PI: 8.1329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG016134t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.5e-12	91	141	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ + +++Lr llP ++K s ++ +Av+YIk+Lq Thecc1EG016134t1 91 IIHRDIERQRRQEMTTLYSTLRLLLPLeY---LKGKRSISDHMHEAVKYIKHLQ 141 5699*********************77...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.68E-4	86	144	No hit	No description
SuperFamily	SSF47459	3.01E-14	87	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.995	88	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	92	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-10	92	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-4	94	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDRSQSKRYR GDLGLRNMDC AASEFPSEES TVELFQFFSI PCQQDSSNPK QDEQNLILVS 60 KKSDCSRGKR KAATAFGVED GNAPDSKGKK IIHRDIERQR RQEMTTLYST LRLLLPLEYL 120 KGKRSISDHM HEAVKYIKHL QNRITELSDK REELKRSSNL HTPSSMPESS PDCSEDSVVV 180 RGCMVGVEIA INTGLRPGLP LSNVLDVIVA EGLSVVNCIS TKVNERLLHT IVLEVNDGRS 240 IELSELQQKL TKLIIRPPG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007040062.1	0.0	PREDICTED: transcription factor bHLH118
TrEMBL	A0A061G572	0.0	A0A061G572_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY24563	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	6e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG016134t1
Entrez Gene	18606412

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]