PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016176t1
Common NameTCM_016176
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 232aa    MW: 24637.5 Da    PI: 4.8821
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016176t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-1675122355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Thecc1EG016176t1  75 YRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 122
                       9***9.55.6*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-2774136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-2674130IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1874131IPR016177DNA-binding domain
PROSITE profilePS5103219.94174130IPR001471AP2/ERF domain
CDDcd000189.28E-1675130No hitNo description
PfamPF008471.2E-975122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MADPNNPTNV PQLDQPYSHS PVPSSSLQDP NIQVPHPLPT NTHTCDSPSP TCDKLPPTAP  60
KSNMASSSSG KHPMYRGIRC RSGKWVSEIR EPRKTTRIWL GTYPTPEMAA AAYDVAALAL  120
KGGEAVVNFP GSVASYPLPA STSSADIRKA AAAAALLKKA ETTSEINLGT GHQAKNEEMT  180
TQEYVDEDAL LNLPNLLVDM AEGLLVSPPR ISSTPSDDSP ENSDGESLWS Y*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040122.21e-168PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9CAN92e-55ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A061G5E71e-168A0A061G5E7_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY246231e-168(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-51ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]